flowstab.scripts.run_laplacians_transmats
Helper script to automatize and parallelize the computation of Laplacians,
inter-event transition matrices and transition matrices for a temporal network.
Computes the inter event transition matrices. This is done by first splitting
the temporal network in a given number of slices (controlled by num_slices or slice_length) and spreading the computation
for each slice over ncpu parallel jobs.
The results for each slice and each value of the resolution (tau_w_list) are saved in separate files
named {savedir}/{net_name}_tau_w{tau_w}_int{slice_number}__inter_trans_mat.{ext}.
Module Contents
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flowstab.scripts.run_laplacians_transmats.main()[source]
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flowstab.scripts.run_laplacians_transmats.worker(net_start_stop)[source]
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flowstab.scripts.run_laplacians_transmats.ap[source]
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flowstab.scripts.run_laplacians_transmats.args[source]
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flowstab.scripts.run_laplacians_transmats.attributes_list_to_save = ['_t_start_laplacians', '_k_start_laplacians', '_t_stop_laplacians', '_k_stop_laplacians',...[source]
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flowstab.scripts.run_laplacians_transmats.batch[source]
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flowstab.scripts.run_laplacians_transmats.batch[source]
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flowstab.scripts.run_laplacians_transmats.batch_num[source]
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flowstab.scripts.run_laplacians_transmats.batch_size[source]
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flowstab.scripts.run_laplacians_transmats.compress_inter_T[source]
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flowstab.scripts.run_laplacians_transmats.compress_slice_trans[source]
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flowstab.scripts.run_laplacians_transmats.compute_expm_transmat[source]
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flowstab.scripts.run_laplacians_transmats.compute_intermediate = True[source]
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flowstab.scripts.run_laplacians_transmats.compute_lin_transmat[source]
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flowstab.scripts.run_laplacians_transmats.datadir[source]
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flowstab.scripts.run_laplacians_transmats.force_csr[source]
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flowstab.scripts.run_laplacians_transmats.full_batch[source]
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flowstab.scripts.run_laplacians_transmats.inargs[source]
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flowstab.scripts.run_laplacians_transmats.intervals_to_skip[source]
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flowstab.scripts.run_laplacians_transmats.ncpu[source]
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flowstab.scripts.run_laplacians_transmats.net[source]
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flowstab.scripts.run_laplacians_transmats.net_filename[source]
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flowstab.scripts.run_laplacians_transmats.net_name[source]
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flowstab.scripts.run_laplacians_transmats.num_slices[source]
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flowstab.scripts.run_laplacians_transmats.optional[source]
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flowstab.scripts.run_laplacians_transmats.required[source]
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flowstab.scripts.run_laplacians_transmats.reverse_time_list = [False, True][source]
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flowstab.scripts.run_laplacians_transmats.save_delta_inter_T[source]
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flowstab.scripts.run_laplacians_transmats.save_flow_int[source]
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flowstab.scripts.run_laplacians_transmats.save_inter_T[source]
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flowstab.scripts.run_laplacians_transmats.save_slice_trans[source]
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flowstab.scripts.run_laplacians_transmats.save_static_adjacencies[source]
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flowstab.scripts.run_laplacians_transmats.savedir[source]
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flowstab.scripts.run_laplacians_transmats.slice_length[source]
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flowstab.scripts.run_laplacians_transmats.t0[source]
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flowstab.scripts.run_laplacians_transmats.t_s[source]
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flowstab.scripts.run_laplacians_transmats.t_starts[source]
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flowstab.scripts.run_laplacians_transmats.t_stops[source]
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flowstab.scripts.run_laplacians_transmats.tau_ws[source]
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flowstab.scripts.run_laplacians_transmats.tend[source]
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flowstab.scripts.run_laplacians_transmats.time_slices[source]
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flowstab.scripts.run_laplacians_transmats.time_slices_from_net_file[source]
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flowstab.scripts.run_laplacians_transmats.tol[source]
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flowstab.scripts.run_laplacians_transmats.total_num_batches[source]
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flowstab.scripts.run_laplacians_transmats.use_dense_expm[source]
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flowstab.scripts.run_laplacians_transmats.use_sparse_stoch[source]
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flowstab.scripts.run_laplacians_transmats.verbose[source]